miRBase entry: gga-mir-1680

Stem-loop gga-mir-1680


Accession
MI0007414
Description
Gallus gallus gga-mir-1680 precursor miRNA

Literature search
1 open access papers mention gga-mir-1680
(4 sentences)

Sequence

2 reads, 0 reads per million, 1 experiments
gcugggcacugcuUUCCUCCUGGGUACAACUCUGCugucuuuguacuuucuacuugCAGGCGGUAUCAGGAGGCUGAgcugugcccagc
(((((((((.((((.((((((((.(((..(.((((....................)))))..)))))))))))..)))).)))))))))

Structure
         u    -U        G   AA U    ugucuuugu 
gcugggcac gcuU  CCUCCUGG UAC  C CUGC         a
||||||||| ||||  |||||||| |||  | ||||          
cgacccgug cgAG  GGAGGACU AUG  G GACg         c
         u    UC        -   GC -    uucaucuuu 


Annotation confidence Not enough data
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Genome context
chr10: 15878829-15878917 [+]

Database links

Mature gga-miR-1680-5p

Accession MIMAT0007566
Description Gallus gallus gga-miR-1680-5p mature miRNA
Sequence 14 - UUCCUCCUGGGUACAACUCUGC - 35
Evidence experimental
Illumina [1]

Mature gga-miR-1680-3p

Accession MIMAT0007567
Description Gallus gallus gga-miR-1680-3p mature miRNA
Sequence 57 - CAGGCGGUAUCAGGAGGCUGA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964