miRBase entry: gga-mir-1687

Stem-loop gga-mir-1687


Accession
MI0007421
Description
Gallus gallus gga-mir-1687 precursor miRNA

Literature search
1 open access papers mention gga-mir-1687
(4 sentences)

Sequence

10 reads, 0 reads per million, 3 experiments
gauuucuuugugucuguggucUGAGGAAAUGAGCCAGCUGAGuuagcaacuucuUUGCUGGCUGUUUCUCAGUGAcugcagcauaaaaauc
(((((..(((((.(((((((((((((((...(((((((.(((..........))).))))))).)))))))..))))))))))))))))))

Structure
     cu     u        --       AUG       U   uuag 
gauuu  uugug cugugguc  UGAGGAA   AGCCAGC GAG    c
|||||  ||||| ||||||||  |||||||   ||||||| |||     
cuaaa  aauac gacgucAG  ACUCUUU   UCGGUCG Uuc    a
     --     -        UG       --G       U   uuca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr20: 13296363-13296453 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1687
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1687-5p

Accession MIMAT0007576
Description Gallus gallus gga-miR-1687-5p mature miRNA
Sequence 22 - UGAGGAAAUGAGCCAGCUGAG - 42
Evidence experimental
Illumina [1]

Mature gga-miR-1687-3p

Accession MIMAT0007577
Description Gallus gallus gga-miR-1687-3p mature miRNA
Sequence 55 - UUGCUGGCUGUUUCUCAGUGA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964