Stem-loop sequence gga-mir-1689

Accession

MI0007423 (change log)

Description

Gallus gallus miR-1689 stem-loop

Literature search

1 open access papers mention gga-mir-1689
(6 sentences)

Stem-loop

     u uuaugu   gg      a  ---u      a    gu      -g a  a 
5' gg g      cug  cagaag uc    cugcuu cagu  cugggg  g uc u
   || |      |||  |||||| ||    |||||| ||||  ||||||  | ||  
3' cc c      gac  gucuuc ag    gacgaa guca  ggcccc  c gg g
     u ugucuu   gg      -  uugc      g    gu      ga -  c 

Deep sequencing

15 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr19: 9416330-9416433 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000009362 ; MNT-201; intron 2

Database links

• EntrezGene:MIR1689
• miRBase Tracker:MI0007423

Mature sequence gga-miR-1689-5p

• Accession: MIMAT0007579
• Previous IDs: gga-miR-1689*
• Sequence: 23 - ucucugcuuacagugucugggg - 44
• Deep sequencing: 12 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1689-5p
  • miRDB:gga-miR-1689-5p

Mature sequence gga-miR-1689-3p

• Accession: MIMAT0007580
• Previous IDs: gga-miR-1689
• Sequence: 61 - ccggugacuggaagcagcguuga - 83
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1689-3p
  • miRDB:gga-miR-1689-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).