Stem-loop sequence gga-mir-1713

Accession

MI0007450 (change log)

Description

Gallus gallus miR-1713 stem-loop

Stem-loop

       aaa  ac        -  c  c    --g   g   aa    ugug 
5' cuug   au  cccucccg gc cc cguu   ccc cuc  aguc    a
   ||||   ||  |||||||| || || ||||   ||| |||  ||||    c
3' gaac   ua  gggagggc cg gg gcaa   ggg gag  ucgg    a
       -cg  ga        u  u  c    gaa   a   gc    uuga 

Deep sequencing

6 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr7: 16338832-16338930 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-1713

• gga-mir-10b: chr7: 16343590-16343699 [-]
• gga-mir-1713: chr7: 16338832-16338930 [-]

Database links

• EntrezGene:MIR1713
• miRBase Tracker:MI0007450

Mature sequence gga-miR-1713

• Accession: MIMAT0007609
• Sequence: 57 - cucggagagggaagaacgcggug - 79
• Deep sequencing: 5 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1713
  • miRDB:gga-miR-1713

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).