miRBase entry: gga-mir-1720

Stem-loop gga-mir-1720


Accession
MI0007457
Description
Gallus gallus gga-mir-1720 precursor miRNA


Sequence

2177 reads, 54 reads per million, 3 experiments
uucUGAUCACCUCGGACGUUGCUUUggugacaacccggagcaAAGCAACGAGAGGUCGGUCUGAa
.((.(((((((((...((((((((((.(..........).)))))))))).))))).)))).)).

Structure
u  U    -     GGA          g gaca 
 uc GAUC ACCUC   CGUUGCUUUg u    a
 || |||| |||||   |||||||||| |     
 AG CUGG UGGAG   GCAACGAAac a    c
a  U    C     --A          g ggcc 


Annotation confidence High
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Genome context
chr10: 13134585-13134649 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-1720
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1720-5p

Accession MIMAT0007617
Description Gallus gallus gga-miR-1720-5p mature miRNA
Sequence 4 - UGAUCACCUCGGACGUUGCUUU - 25
Evidence experimental
Illumina [1]

Mature gga-miR-1720-3p

Accession MIMAT0007618
Description Gallus gallus gga-miR-1720-3p mature miRNA
Sequence 43 - AAGCAACGAGAGGUCGGUCUGA - 64
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964