Stem-loop gga-mir-1728

Accession

MI0007466

Description

Gallus gallus gga-mir-1728 precursor miRNA

Literature search

1 open access papers mention gga-mir-1728
(2 sentences)

Sequence

589 reads, 11 reads per million, 5 experiments

gugaauuaguucaucUGGUUGAUCCAUUGGAAGACUGAgcuugagggugaaagagguaaacAGGCUUCUGUAGAUCAGCCAGCugaccugauucau
(((((((((.(((.((((((((((...((((((.(((.((((...........))))...))).))))))..)))))))))).))).)))))))))

Structure

         u   u          CAU      A   --A    gagg 
gugaauuag uca cUGGUUGAUC   UGGAAG CUG   gcuu    g
||||||||| ||| ||||||||||   |||||| |||   ||||    u
uacuuaguc agu GACCGACUAG   GUCUUC GAc   ugga    g
         c   C          -AU      G   aaa    gaaa 

Annotation confidence High

Genome context

chr4: 10981360-10981455 [-]

Mature gga-miR-1728-5p

• Accession: MIMAT0007627
• Description: Gallus gallus gga-miR-1728-5p mature miRNA
• Sequence: 16 - UGGUUGAUCCAUUGGAAGACUGA - 38
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1728-3p

• Accession: MIMAT0007628
• Description: Gallus gallus gga-miR-1728-3p mature miRNA
• Sequence: 62 - AGGCUUCUGUAGAUCAGCCAGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964