Stem-loop sequence gga-mir-1764

Accession

MI0007506 (change log)

Description

Gallus gallus miR-1764 stem-loop

Literature search

2 open access papers mention gga-mir-1764
(6 sentences)

Stem-loop

        c   ---    u       gg     g       a      uga    c 
5' accug uug   gcgu ccauggu  cucag cagcagg ggcuug   gaug u
   ||||| |||   |||| |||||||  ||||| ||||||| ||||||   ||||  
3' uggau aac   ugua ggugucg  ggguc guuguuc ucgaac   uugc g
        c   agg    -       ag     g       g      ---    g 

Deep sequencing

24 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr15: 5824267-5824369 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR1764
• miRBase Tracker:MI0007506

Mature sequence gga-miR-1764-5p

• Accession: MIMAT0007671
• Previous IDs: gga-miR-1764*
• Sequence: 23 - gcucaggcagcaggaggcuug - 43
• Deep sequencing: 7 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1764-5p
  • miRDB:gga-miR-1764-5p

Mature sequence gga-miR-1764-3p

• Accession: MIMAT0007672
• Previous IDs: gga-miR-1764
• Sequence: 61 - agcugcuuguuggcuggggag - 81
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1764-3p
  • miRDB:gga-miR-1764-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).