Stem-loop sequence gga-mir-1805

Accession

MI0007550 (change log)

Description

Gallus gallus miR-1805 stem-loop

Gene family

MIPF0000947; mir-1805

Literature search

1 open access papers mention gga-mir-1805
(1 sentences)

Stem-loop

       ua   u            c      -    a cuu  ca 
5' ggaa  uuc gggaguuguagu uuucaa acag g   ug  a
   ||||  ||| |||||||||||| |||||| |||| |   ||   
3' ccuu  aag cccucgacauca aagguu uguc c   ac  g
       -c   u            c      a    - -au  ag 

Deep sequencing

9590 reads, 60 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 131070174-131070257 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000030259 ; GABRG3-201; intron 5

Database links

• EntrezGene:MIR1805
• RNAcentral:URS000075E743_9031
• miRBase Tracker:MI0007550

Mature sequence gga-miR-1805-5p

• Accession: MIMAT0007722
• Sequence: 13 - gaguuguagucuuucaaacaga - 34
• Deep sequencing: 851 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1805-5p
  • miRDB:gga-miR-1805-5p

Mature sequence gga-miR-1805-3p

• Accession: MIMAT0007723
• Sequence: 53 - uguauuggaacacuacagcuc - 73
• Deep sequencing: 8735 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075D0F6_9031
• Predicted targets:
  • TargetScanVert:gga-miR-1805-3p
  • miRDB:gga-miR-1805-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).