miRBase entry: gga-mir-101-2

Stem-loop gga-mir-101-2


Accession
MI0007558
Description
Gallus gallus gga-mir-101-2 precursor miRNA
Gene family
MIPF0000046; mir-101

Literature search
15 open access papers mention gga-mir-101-2
(228 sentences)

Sequence

1422659 reads, 20517 reads per million, 5 experiments
gcugcccuggcUCAGUUAUCACAGUGCUGAUGCUgucucuuguaaagGUACAGUACUGUGAUAACUGAAggauggc
((((.(((...((((((((((((((((((.((((............))))))))))))))))))))))))).))))

Structure
    c   ggc                  A    gucuc 
gcug ccu   UCAGUUAUCACAGUGCUG UGCU     u
|||| |||   |||||||||||||||||| ||||      
cggu ggA   AGUCAAUAGUGUCAUGAC AUGg     u
    a   ---                  -    aaaug 


Annotation confidence High
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Genome context
chr8: 28360430-28360505 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-101-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-101-3p

Accession MIMAT0001185
Description Gallus gallus gga-miR-101-3p mature miRNA
Sequence 48 - GUACAGUACUGUGAUAACUGAA - 69
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature gga-miR-101-2-5p

Accession MIMAT0031077
Description Gallus gallus gga-miR-101-2-5p mature miRNA
Sequence 12 - UCAGUUAUCACAGUGCUGAUGCU - 34
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45