Stem-loop gga-mir-16c

Accession

MI0007563

Description

Gallus gallus gga-mir-16c precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

23 open access papers mention gga-mir-16c
(232 sentences)

Sequence

138761 reads, 2035 reads per million, 5 experiments

gcucUAGCAGCACGUAAAUACUGGAGugggggaucgccuguugcucuCCAGUAUUGCAUUGCUGCUUUAgu
(((..(((((((....((((((((((..(((.....)))......))))))))))....)))))))..)))

Structure

   cU       CGUA          ----ug   g 
gcu  AGCAGCA    AAUACUGGAG      ggg a
|||  |||||||    ||||||||||      ||| u
ugA  UCGUCGU    UUAUGACCuc      ucc c
   UU       UACG          ucguug   g 

Annotation confidence Not enough data

Genome context

chr4: 4071445-4071515 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-16c

Mature gga-miR-16c-5p

• Accession: MIMAT0007739
• Description: Gallus gallus gga-miR-16c-5p mature miRNA
• Sequence: 5 - UAGCAGCACGUAAAUACUGGAG - 26
• Evidence: experimental ; Illumina [1,3], Northern [2]

Mature gga-miR-16c-3p

• Accession: MIMAT0026786
• Description: Gallus gallus gga-miR-16c-3p mature miRNA
• Sequence: 48 - CCAGUAUUGCAUUGCUGCUUUA - 69
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45