miRBase entry: gga-mir-193a

Stem-loop gga-mir-193a


Accession
MI0007564
Description
Gallus gallus gga-mir-193a precursor miRNA
Gene family
MIPF0000082; mir-193

Literature search
5 open access papers mention gga-mir-193a
(19 sentences)

Sequence

2406 reads, 34 reads per million, 5 experiments
agcugagggcUGGGUCUUUGCGGGCGAGAUGAgagguucgugucuucAACUGGCCUACAAAGUCCCAGUucucggcu
((((((((((((((.(((((.((((.((.(((((........)).))).)).)))).))))).))))))))))))))

Structure
              U     C    G  A   -  ggu 
agcugagggcUGGG CUUUG GGGC AG UGA ga   u
|||||||||||||| ||||| |||| || ||| ||    
ucggcucuUGACCC GAAAC UCCG UC Acu cu   c
              U     A    G  A   u  gug 


Annotation confidence High
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Comments
This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (J_AD0537A21_t807e807.b2).

Genome context
chr18: 6491327-6491403 [+]

Database links

Mature gga-miR-193a-3p

Accession MIMAT0007740
Description Gallus gallus gga-miR-193a-3p mature miRNA
Sequence 48 - AACUGGCCUACAAAGUCCCAGU - 69
Evidence experimental
Illumina [1,3], cloned [2], Northern [2]

Mature gga-miR-193a-5p

Accession MIMAT0026787
Description Gallus gallus gga-miR-193a-5p mature miRNA
Sequence 11 - UGGGUCUUUGCGGGCGAGAUGA - 32
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 18511220
    Identification of novel chicken microRNAs and analysis of their genomic organization
    "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
    "Gene (2008) 418:34-40

  2. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45