Stem-loop sequence mml-mir-1-2

Accession

MI0007569 (change log)

Description

Macaca mulatta miR-1-2 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

3 open access papers mention mml-mir-1-2
(47 sentences)

Stem-loop

   -c                     ac     ugaaca 
5'   agaguacauacuucuuuaugu  ccaua      u
     |||||||||||||||||||||  |||||       
3'   uuuuauguaugaagaaaugua  gguau      a
   gu                     -a     cguaac 

Deep sequencing

11024427 reads, 5.49e+04 reads per million, 9 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr18: 10284217-10284288 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-1-2

• mml-mir-1-2: chr18: 10284217-10284288 [-]
• mml-mir-133a: chr18: 10280933-10281020 [-]

Database links

• EntrezGene:MIR1-2
• miRBase Tracker:MI0007569

Mature sequence mml-miR-1-2-5p

• Accession: MIMAT0031099
• Sequence: 7 - acauacuucuuuauguacccaua - 29
• Deep sequencing: 7 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mml-miR-1-2-5p

Mature sequence mml-miR-1-3p

• Accession: MIMAT0006150
• Sequence: 46 - uggaauguaaagaaguauguau - 67
• Deep sequencing: 22045433 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00001DC04F_9544
• Predicted targets:
  • TargetScanVert:mml-miR-1-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).