Stem-loop sequence mml-mir-134

Accession

MI0007623 (change log)

Description

Macaca mulatta miR-134 stem-loop

Gene family

MIPF0000112; mir-134

Literature search

1 open access papers mention mml-mir-134
(1 sentences)

Stem-loop

   c     gu        u  -a   g    gcgu  a 
5'  agggu  gugacugg ug  cca aggg    gc c
    |||||  |||||||| ||  ||| ||||    || u
3'  uccca  cacugauc ac  ggu uccc    ug g
   c     ac        c  cg   g    -acu  u 

Deep sequencing

68466 reads, 356 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr7: 163388701-163388773 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-134

• mml-mir-381: chr7: 163379925-163379999 [+]
• mml-mir-487b: chr7: 163380460-163380543 [+]
• mml-mir-539: chr7: 163381316-163381393 [+]
• mml-mir-889: chr7: 163381893-163381971 [+]
• mml-mir-544: chr7: 163382652-163382742 [+]
• mml-mir-487a: chr7: 163386465-163386544 [+]
• mml-mir-382: chr7: 163388320-163388395 [+]
• mml-mir-134: chr7: 163388701-163388773 [+]
• mml-mir-668: chr7: 163389270-163389335 [+]
• mml-mir-485: chr7: 163389434-163389506 [+]
• mml-mir-323b: chr7: 163390241-163390297 [+]
• mml-mir-154: chr7: 163393750-163393833 [+]
• mml-mir-496: chr7: 163394601-163394702 [+]
• mml-mir-377: chr7: 163395850-163395918 [+]
• mml-mir-541: chr7: 163398288-163398371 [+]

Database links

• EntrezGene:MIR134
• RNAcentral:URS000070357E_9544
• miRBase Tracker:MI0007623

Mature sequence mml-miR-134-5p

• Accession: MIMAT0006190
• Sequence: 8 - ugugacugguugaccagagggg - 29
• Deep sequencing: 68348 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000272A92_9544
• Predicted targets:
  • TargetScanVert:mml-miR-134-5p

Mature sequence mml-miR-134-3p

• Accession: MIMAT0026819
• Sequence: 46 - ccugugggccaccuagucaccaa - 68
• Deep sequencing: 111 reads, 6 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mml-miR-134-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).