miRBase entry: mml-mir-654

Stem-loop mml-mir-654


Accession
MI0007898
Description
Macaca mulatta mml-mir-654 precursor miRNA
Gene family
MIPF0000409; mir-654

Literature search
1 open access papers mention mml-mir-654
(3 sentences)

Sequence

3648 reads, 27 reads per million, 9 experiments
ggguaaguggaaagaUGGUGGGCCGCAGAACAUGUGCugaguucgugccaUAUGUCUGCUGACCAUCACCUUuagaagccc
((((......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))....))))

Structure
    aagugg    a      G C     A      - uga 
gggu      aaag UGGUGG C GCAGA CAUGUG C   g
||||      |||| |||||| | ||||| |||||| |   u
cccg      uUUC ACUACC G CGUCU GUAUac g   u
    --aaga    C      A U     -      c ugc 


Annotation confidence High
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Genome context
chr7: 163374225-163374305 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from mml-mir-654
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-654-5p

Accession MIMAT0006495
Description Macaca mulatta mml-miR-654-5p mature miRNA
Sequence 16 - UGGUGGGCCGCAGAACAUGUGC - 37
Evidence not_experimental

Mature mml-miR-654-3p

Accession MIMAT0006496
Description Macaca mulatta mml-miR-654-3p mature miRNA
Sequence 51 - UAUGUCUGCUGACCAUCACCUU - 72
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8