Stem-loop vvi-MIR169i

Accession

MI0007942

Description

Vitis vinifera vvi-MIR169i precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169i
(17 sentences)

Sequence

aggguggaauuGAGCCAAGGAUGACUGGCCGUcauuuuucaguugguauuugaggcuuuaacuggucaugcacggcugguuaucccugucuccuuuagcuccucu
.((((.(((..(((.((.(((((((((((((((((...((((((((...........))))))))..))).)))))))))))))).)).))).))).))))....

Structure

---a    g   uu   C  A              -   uuu        uauu 
    gggu gaa  GAG CA GGAUGACUGGCCGU cau   ucaguugg    u
    |||| |||  ||| || |||||||||||||| |||   ||||||||    g
    cucg uuu  cuc gu ccuauuggucggca gua   ggucaauu    a
ucuc    a   -c   u  c              c   -cu        ucgg 

Annotation confidence Not enough data

Genome context

chr11: 16158014-16158118 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169i

Mature vvi-miR169i

• Accession: MIMAT0006547
• Description: Vitis vinifera vvi-miR169i mature miRNA
• Sequence: 12 - GAGCCAAGGAUGACUGGCCGU - 32
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558