miRBase entry: vvi-MIR169l

Stem-loop vvi-MIR169l


Accession
MI0007943
Description
Vitis vinifera vvi-MIR169l precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
8 open access papers mention vvi-MIR169l
(16 sentences)

Sequence

1268 reads, 86 reads per million, 2 experiments
aggguggaauuGAGCCAAGGAUGACUUGCCGUccuuugcaucaagcauugaagcuuuaacugggcaugcacggcuaguuauucuuggcucauuuggccccucu
.((((.((((.(((((((((((((((.(((((.(..(((.((((((......))).....)))))).).))))).))))))))))))))))))).))))....

Structure
---a    g    u               U     c uu   a   -----   au 
    gggu gaau GAGCCAAGGAUGACU GCCGU c  ugc uca     agc  u
    |||| |||| ||||||||||||||| ||||| |  ||| |||     |||   
    cccg uuua cucgguucuuauuga cggca g  acg ggu     ucg  g
ucuc    g    -               u     c -u   -   caauu   aa 


Annotation confidence Not enough data
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Genome context
chr11: 16185290-16185392 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from vvi-MIR169l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature vvi-miR169l

Accession MIMAT0006548
Description Vitis vinifera vvi-miR169l mature miRNA
Sequence 12 - GAGCCAAGGAUGACUUGCCGU - 32
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558