Stem-loop sequence vvi-MIR169n

Accession MI0007944
Description Vitis vinifera miR169n stem-loop
Gene family MIPF0000037; MIR169_2
Stem-loop 
--uga             aa     a      ggcaacugcagcaaggcau 
     guggaauagagcc  ggaug cuugcc                   a
     |||||||||||||  ||||| ||||||                    
     cacuuuaucucgg  ucuac gaacgg                   g
ucucc             ag     -      ucaauacuggucaauuugg
Get sequence
Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chr11: 16380240-16380340 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR169n
vvi-MIR169n chr11: 16380240-16380340 [+]
vvi-MIR169q chr11: 16384484-16384580 [+]
Database links

Mature sequence vvi-miR169n

Accession MIMAT0006549
Sequence

12 -  

gagccaaggaugacuugccgg

 - 32

Get sequence
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).