miRBase entry: vvi-MIR393a

Stem-loop vvi-MIR393a


Accession
MI0007952
Description
Vitis vinifera vvi-MIR393a precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
4 open access papers mention vvi-MIR393a
(13 sentences)

Sequence

8 reads, 1 reads per million, 2 experiments
gguggacaguUCCAAAGGGAUCGCAUUGAUCccaugguuaucuuccaccucucuuaccagacuaucauaacaaagucuggccuuuuucccauuggaucaugcuaucccuuaggaacucuccaucag
((((((.((((((.(((((((.((((.(((((.((((...................(((((((..........)))))))........)))).))))))))).))))))).)))))).))))))..

Structure
--      c      A       C    U     c    uuaucuuccaccucucuua       auca 
  ggugga aguUCC AAGGGAU GCAU GAUCc augg                   ccagacu    u
  |||||| |||||| ||||||| |||| ||||| ||||                   |||||||     
  cuaccu ucaagg uucccua cgua cuagg uacc                   ggucuga    a
ga      c      a       u    -     u    -----------cuuuuucc       aaca 


Annotation confidence Not enough data
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Genome context
chr16: 17247187-17247312 [-]

Database links

Mature vvi-miR393a

Accession MIMAT0006557
Description Vitis vinifera vvi-miR393a mature miRNA
Sequence 11 - UCCAAAGGGAUCGCAUUGAUC - 31
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558