miRBase entry: vvi-MIR394c

Stem-loop vvi-MIR394c


Accession
MI0007953
Description
Vitis vinifera vvi-MIR394c precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
3 open access papers mention vvi-MIR394c
(5 sentences)

Sequence

52 reads, 4 reads per million, 2 experiments
cagagccauuUUGGCAUUCUGUCCACCUCCAUauauaccaauucuucugaauuggcgcccacaagcguuuggaggcggccaggaugccaaauuggcucugua
((((((((.((((((((((((.((.((((((......(((((((....)))))))(((......)))..)))))).)).)))))))))))).))))))))..

Structure
--        u            U  A      --------Uauaua       u 
  cagagcca uUUGGCAUUCUG CC CCUCCA              ccaauuc u
  |||||||| |||||||||||| || ||||||              |||||||  
  gucucggu aaaccguaggac gg ggaggu              gguuaag c
au        u            c  c      uugcgaacacccgc       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr18: 3551260-3551361 [-]

Database links

Mature vvi-miR394c

Accession MIMAT0006558
Description Vitis vinifera vvi-miR394c mature miRNA
Sequence 11 - UUGGCAUUCUGUCCACCUCCAU - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558