miRBase entry: vvi-MIR395n

Stem-loop vvi-MIR395n


Accession
MI0007954
Description
Vitis vinifera vvi-MIR395n precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention vvi-MIR395n
(23 sentences)

Sequence

6 reads, 0 reads per million, 2 experiments
ggccuugagaguucccccaaccccuccaguaugaccaucucucuucuucuuuuaauuuguucaucaaaucuucuucuacuaucuauuuccagggugauuuccucuaCUGAAGAGUCUGGAGGAACUCuuggugccac
(((.(((((((((((.(((..(.((.(((((.((..(((.((((..............................................)))).)))....))))))).)).)..))).))))))))))).)))..

Structure
--   c           c   ac c  c     u  --cc   u    ucuucuuuuaauuuguucauca 
  ggc uugagaguucc cca  c cu cagua ga    auc cucu                      a
  ||| ||||||||||| |||  | || ||||| ||    ||| ||||                       
  ccg gguuCUCAAGG GGU  G GA GUCau cu    uag ggga                      a
ca   u           A   CU A  A     -  ccuu   u    ccuuuaucuaucaucuucuucu 


Annotation confidence Not enough data
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Genome context
chr17: 6408995-6409131 [-]

Database links

Mature vvi-miR395n

Accession MIMAT0006559
Description Vitis vinifera vvi-miR395n mature miRNA
Sequence 107 - CUGAAGAGUCUGGAGGAACUC - 127
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558