miRBase entry: vvi-MIR396c

Stem-loop vvi-MIR396c


Accession
MI0007955
Description
Vitis vinifera vvi-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
5 open access papers mention vvi-MIR396c
(28 sentences)

Sequence

4990 reads, 332 reads per million, 2 experiments
uucugugaucUUCCACAGCUUUCUUGAACUGuuuuggaagccuuccacuuccaugcaauggaggaguucaaccaacagcucaggaaaguuguggaacauuacugagag
(((.(((((.(((((((((((((((((.((((((((((..(((.(((...........))))))..)))))..))))).))))))))))))))))).))))).)))..

Structure
--   u     c                 A     --     ag   u   cuuc 
  uuc gugau UUCCACAGCUUUCUUGA CUGuu  uugga  ccu cca    c
  ||| ||||| ||||||||||||||||| |||||  |||||  ||| |||    a
  gag cauua aagguguugaaaggacu gacaa  aacuu  gga ggu    u
ga   u     c                 c     cc     ga   -   aacg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 5119591-5119698 [-]

Database links

Mature vvi-miR396c

Accession MIMAT0006560
Description Vitis vinifera vvi-miR396c mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUG - 31
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558