Stem-loop vvi-MIR397a

Accession

MI0007956

Description

Vitis vinifera vvi-MIR397a precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

5 open access papers mention vvi-MIR397a
(15 sentences)

Sequence

7008 reads, 472 reads per million, 2 experiments

gaagaaaacaUCAUUGAGUGCAGCGUUGAUGaaacugaaguauuccauuuuucagcuucuuugaaguccggcaagauggguucugguugauuccauuggcgcugcacucaaucauguc
.......((((.(((((((((((((((((((.((.(.((.((.((((((((((.(((((...)))))..)).))))))))...)).)).))).))))))))))))))))))).)))).

Structure

gaagaaa    C                   a  c g  g  --u        -  -a     u 
       acaU AUUGAGUGCAGCGUUGAUG aa u aa ua   uccauuuu uc  gcuuc  
       |||| ||||||||||||||||||| || | || ||   |||||||| ||  ||||| u
       ugua uaacucacgucgcgguuac uu a uu gu   ggguagaa gg  ugaag  
------c    c                   c  - g  g  cuu        c  cc     u 

Annotation confidence Not enough data

Genome context

NW_003724218.1: 139445-139562 [-]

Mature vvi-miR397a

• Accession: MIMAT0006561
• Description: Vitis vinifera vvi-miR397a mature miRNA
• Sequence: 11 - UCAUUGAGUGCAGCGUUGAUG - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558