Stem-loop sequence vvi-MIR398c

Accession MI0007959
Description Vitis vinifera miR398c stem-loop
Gene family MIPF0000107; MIR398
Stem-loop 
--gu    ua    a            u      ccc   ucac 
    gucc  cagg gugaccugagaa cacaug   gca    c
    ||||  |||| |||||||||||| ||||||   |||    c
    cagg  gucc cgcuggacucuu guguac   cgu    a
cccu    uc    c            -      ucu   uucu
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Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chr6: 15575581-15575668 [+]
intergenic
Database links

Mature sequence vvi-miR398c

Accession MIMAT0006564
Sequence

58 -  

uguguucucaggucgccccug

 - 78

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Evidence experimental; Array [2], Solexa [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).