miRBase entry: vvi-MIR398c

Stem-loop vvi-MIR398c


Accession
MI0007959
Description
Vitis vinifera vvi-MIR398c precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
2 open access papers mention vvi-MIR398c
(4 sentences)

Sequence

389 reads, 27 reads per million, 2 experiments
guguccuacaggagugaccugagaaucacaugcccgcaucacccaucuuugcucucaUGUGUUCUCAGGUCGCCCCUGcuggacuccc
..((((..((((.((((((((((((.((((((...(((...........)))...)))))))))))))))))).))))..))))....

Structure
--gu    ua    a            u      ccc   ucac 
    gucc  cagg gugaccugagaa cacaug   gca    c
    ||||  |||| |||||||||||| ||||||   |||    c
    cagg  GUCC CGCUGGACUCUU GUGUac   cgu    a
cccu    uc    C            -      ucu   uucu 


Annotation confidence Not enough data
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Genome context
chr6: 15575581-15575668 [+]

Database links

Mature vvi-miR398c

Accession MIMAT0006564
Description Vitis vinifera vvi-miR398c mature miRNA
Sequence 58 - UGUGUUCUCAGGUCGCCCCUG - 78
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558