Stem-loop vvi-MIR403b

Accession

MI0007965

Description

Vitis vinifera vvi-MIR403b precursor miRNA

Gene family

MIPF0000290; MIR403

Literature search

2 open access papers mention vvi-MIR403b
(5 sentences)

Sequence

321 reads, 22 reads per million, 2 experiments

acaaaccucgaguuugugcgcgaauccaacgccucgaucuucuuucaaaggggugUUAGAUUCACGCACAAACUCGggaucugucu
......((((((((((((((.(((((.((((((((..............)))))))).))))).))))))))))))))........

Structure

--acaaac              c     c        gaucuu 
        cucgaguuugugcg gaauc aacgccuc      c
        |||||||||||||| ||||| ||||||||       
        ggGCUCAAACACGC CUUAG UUgugggg      u
ucugucua              A     A        aaacuu 

Annotation confidence Not enough data

Genome context

chr5: 600181-600266 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR403b

Mature vvi-miR403b

• Accession: MIMAT0006570
• Description: Vitis vinifera vvi-miR403b mature miRNA
• Sequence: 56 - UUAGAUUCACGCACAAACUCG - 76
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558