miRBase entry: vvi-MIR403d

Stem-loop vvi-MIR403d


Accession
MI0007967
Description
Vitis vinifera vvi-MIR403d precursor miRNA
Gene family
MIPF0000290; MIR403

Literature search
2 open access papers mention vvi-MIR403d
(5 sentences)

Sequence

321 reads, 22 reads per million, 2 experiments
acaaaccucgaguuugugcgcgaauccaaccccucaaucuucuuucaaaggggugUUAGAUUCACGCACAAACUCGggaucugucu
......((((((((((((((.(((((..((((((..............))))))....))))).))))))))))))))........

Structure
--acaaac              c     --ca      caaucu 
        cucgaguuugugcg gaauc    accccu      u
        |||||||||||||| |||||    ||||||       
        ggGCUCAAACACGC CUUAG    ugggga      c
ucugucua              A     AUUg      aacuuu 


Annotation confidence Not enough data
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Genome context
chr5: 166482-166567 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from vvi-MIR403d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature vvi-miR403d

Accession MIMAT0006572
Description Vitis vinifera vvi-miR403d mature miRNA
Sequence 56 - UUAGAUUCACGCACAAACUCG - 76
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558