Stem-loop sequence vvi-MIR482

Accession MI0007971
Description Vitis vinifera miR482 stem-loop
Gene family MIPF0000403; MIR482
Stem-loop 
--aauguu       u    -          c     ca    uu    ----      uuu 
        ugggaau ggag aguaggaaag uuagc  ucua  cccu    ucaugg   c
        ||||||| |||| |||||||||| |||||  ||||  ||||    ||||||    
        auccuua ccuc ucauccuuuc gaucg  agau  gggg    gguacc   c
cuuuuguu       c    c          u     --    cu    guua      ucu
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Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chr17: 5523024-5523140 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR482
vvi-MIR3633b chr17: 5521567-5521678 [+]
vvi-MIR3633a chr17: 5521907-5522061 [+]
vvi-MIR482 chr17: 5523024-5523140 [+]
Database links
  • ENTREZGENE: 100272043;MIR482

Mature sequence vvi-miR482

Accession MIMAT0006576
Sequence

86 -  

ucuuuccuacuccucccauucc

 - 107

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Evidence experimental; Solexa [2]
Validated targets

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).