Stem-loop vvi-MIR845a

Accession

MI0007974

Description

Vitis vinifera vvi-MIR845a precursor miRNA

Gene family

MIPF0000543; MIR845_3

Literature search

4 open access papers mention vvi-MIR845a
(8 sentences)

Sequence

392 reads, 18 reads per million, 2 experiments

uuucacuugauuaguuccuucaugaguuauugcaaguaaucuccaaauuuccuuagcggauuuacauugacauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaacgacuuuagcauuuaauugaaaauuucuucuaucaagcucauuccauucuugcuuggguuuuggaaccaaaauuccaucaacuaauuuaguggguaaaguugggccaucuucaauggcaucccauacaucuaaaucaguugauuguaaguaccaagucauucuagcuuuccaauagggauagucgguucccguaaagaauggagcucuauguuuugaacaauuuucaguuugagaugagcuugauggaauagccauuuuccucuuagaugauuaagucuuaagcaagaggucUAGCUCUGAUACCAAUUGAUAaaacaaaggc
.........(((((((...(((.((((((((((........................((((......(((.((((......))))))).....))))...(((...)))...........(((((...(((((((..((((((..((((((((((((((.((((((((((((((((.....((((......))))(((((((.((((((((((.........(((((.....)))))..)))).....)))))).)))))))........)))))).......(((.(((.....))).)))(((...)))..))))))))))......(((((((((........)))))))))))))))))))))..))..))))))...)))))))...)))))....))))......)))))))))....)))))))...........

Structure

--uuucacuug       -ccu   u      ------    aaguaaucuccaaauuuccuuagcggauuuacauugacauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaac     uag       -uu      uu  --            -------------------------------a          -------------------------------------      guuuuggaaccaaaauucc       a      -----    uaaaguugg     c 
           auuaguu    uca gaguua      uugc                                                                                       gacuu   cauuuaa   gaaaau  cu  ucuaucaagcuc                                uuccauucuu                                     gcuugg                   aucaacu auuuag     uggg         gccau u
           |||||||    ||| ||||||      ||||                                                                                       |||||   |||||||   ||||||  ||  ||||||||||||                                ||||||||||                                     ||||||                   ||||||| ||||||     ||||         ||||| u
           UAGUUAA    AGU CUCGAU      aacg                                                                                       cugaa   guagauu   cuuuua  ga  agguaguucgag                                gagguaagaa                                     ugaacc                   uaguuga uaaauc     accc         cggua c
cggaaacaaaA       CCAU   -      cuggag    -----------------------------------------------------------------------------------aauu     uua       cuc      cc  ua            uagaguuugacuuuuaacaaguuuuguaucuc          augcccuuggcugauagggauaaccuuucgaucuuac      -----------augaaugu       c      uacau    -------ua     a 

Annotation confidence Not enough data

Genome context

chr16: 20504749-20505190 [+]

Mature vvi-miR845a

• Accession: MIMAT0006579
• Description: Vitis vinifera vvi-miR845a mature miRNA
• Sequence: 412 - UAGCUCUGAUACCAAUUGAUA - 432
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467