Stem-loop vvi-MIR845b

Accession

MI0007975

Description

Vitis vinifera vvi-MIR845b precursor miRNA

Gene family

MIPF0000543; MIR845_3

Literature search

4 open access papers mention vvi-MIR845b
(8 sentences)

Sequence

405 reads, 18 reads per million, 2 experiments

uuucacuugauuaguuccuucaugaguuauuucaagcaaucuccaaauuuccuuagcagauuuacauuggcauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaacgacuuuagcauuuaauugaaaauuucuucuaucaagcucauuccauucuugcuugaguuuuggaaccaaaacuccaucaacuaauuuagugggaaaaguugggccaucuucaaugacaucccauacaucuaaaucaguugauuguaaguaccaagucauucuaacuuuccaauagggauagucgguucccguaaagaauggagcucuauguuuugaacaauuuucaguuugagaugagcuugauggaacaaccauuuuccucuuagaugauuaagucuuaagcaagaggucUAGCUCUGAUACCAAUUGAUAaaacaaaggc
.........(((((((...(((.((((((((((..((..............(((.((((........(((.(((..................)))))).......)))).))).......(((((...(((((((..((((((((.(((((((((((((.((((((((((((..((((((((....)))))))).(((((((.(((((((((((...((((((.....))))))....))))).....)))))).)))))))..........((((.......)))).......((((........)))))).))))))))))......(((((((((........)))))))))))))))))))))).))..))))))...)))))))...)))))....))..)))))..))))))))....)))))))...........

Structure

--uuucacuug       -ccu   u     --     aa  aaucuccaaauuuccuuagcagauuuacauuggcauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaac     uag       -uu      --  c             -------------------------------a          -  -------------------------uugaguuuuggaaccaaaacucc       a      -----     -aaa      c 
           auuaguu    uca gaguu  auuuc  gc                                                                                   gacuu   cauuuaa   gaaaau  uu uucuaucaagcuc                                uuccauucuu gc                                                aucaacu auuuag     uggga    guuggg c
           |||||||    ||| |||||  |||||  ||                                                                                   |||||   |||||||   ||||||  || |||||||||||||                                |||||||||| ||                                                ||||||| ||||||     |||||    |||||| a
           UAGUUAA    AGU CUCGA  uggag  cg                                                                                   cugaa   guagauu   cuuuua  aa aagguaguucgag                                gagguaagaa ug                                                uaguuga uaaauc     acccu    uaacuu u
cggaaacaaaA       CCAU   -     Uc     aa  -------------------------------------------------------------------------------aauu     uua       cuc      cc  c             uagaguuugacuuuuaacaaguuuuguaucuc          a  cccuuggcugauagggauaaccuuucaaucuuacugaaccaugaaugu       c      uacau     acag      c 

Annotation confidence Not enough data

Genome context

chr2: 12264843-12265284 [+]

Mature vvi-miR845b

• Accession: MIMAT0006580
• Description: Vitis vinifera vvi-miR845b mature miRNA
• Sequence: 412 - UAGCUCUGAUACCAAUUGAUA - 432
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467