miRBase entry: cfa-let-7f

Stem-loop cfa-let-7f


Accession
MI0008006
Description
Canis familiaris cfa-let-7f precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

UGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaacuauacaaucuauugccuuccc
.((((((((((((((((((((((((((((((.....))))))).........)))))))))))))))))))))))...

Structure
--U                       ---------       u 
   GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
   |||||||||||||||||||||||         ||||||| a
   uuccguuaucuaacauaucaaua         ucccauu u
ccc                       gaggacuug       u 


Annotation confidence Not enough data
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Genome context
chr1: 97903931-97904008 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-let-7f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-let-7f

Accession MIMAT0006610
Description Canis familiaris cfa-let-7f mature miRNA
Sequence 1 - UGAGGUAGUAGAUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415