miRBase entry: cfa-mir-30b

Stem-loop cfa-mir-30b


Accession
MI0008013
Description
Canis familiaris cfa-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

UGUAAACAUCCUACACUCAGCUguaguacauggauuggcugggagguggauguuuacuuc
.((((((((((.((.((((((((............))))))))..))))))))))))...

Structure
--U          U  -A        uagua 
   GUAAACAUCC AC  CUCAGCUg     c
   |||||||||| ||  ||||||||      
   cauuuguagg ug  gggucggu     a
cuu          -  ga        uaggu 


Annotation confidence Not enough data
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Genome context
chr13: 30906038-30906097 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-30b

Accession MIMAT0006617
Description Canis familiaris cfa-miR-30b mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCAGCU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415