miRBase entry: cfa-mir-30e

Stem-loop cfa-mir-30e

Accession

MI0008023

Description

Canis familiaris cfa-mir-30e precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

uguaaacauccuugacuggaagcuguaaggugcucagaggggCUUUCAGUCGGAUGUUUACAGC
(((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))..

Structure

--           uu           g aag u 
  uguaaacaucc  gacuggaagcu u   g g
  |||||||||||  ||||||||||| |   |  
  ACAUUUGUAGG  CUGACUUUCgg g   c c
CG           --           g aga u

Annotation confidence Not enough data

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Genome context

chr15: 2283306-2283369 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-30e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-30e

Accession	MIMAT0006627
Description	Canis familiaris cfa-miR-30e mature miRNA
Sequence	43 - CUUUCAGUCGGAUGUUUACAGC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415