miRBase entry: cfa-mir-486

Stem-loop cfa-mir-486


Accession
MI0008027
Description
Canis familiaris cfa-mir-486 precursor miRNA
Gene family
MIPF0000220; mir-486


Sequence

UCCUGUACUGAGCUGCCCCGAgcugagcgcagugaauggccUCGGGGCAGCUCAGUACAGGAUc
((((((((((((((((((((((....((.((.....))))))))))))))))))))))))))..

Structure
--                      cuga  g  g 
  UCCUGUACUGAGCUGCCCCGAg    gc ca u
  ||||||||||||||||||||||    || || g
  AGGACAUGACUCGACGGGGCUc    cg gu a
cU                      ----  -  a 


Annotation confidence Not enough data
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Genome context
chr16: 23958963-23959026 [-]

Database links

Mature cfa-miR-486

Accession MIMAT0011132
Description Canis familiaris cfa-miR-486 mature miRNA
Sequence 1 - UCCUGUACUGAGCUGCCCCGA - 21
Evidence experimental
Illumina [1-2]

Mature cfa-miR-486-3p

Accession MIMAT0032036
Description Canis familiaris cfa-miR-486-3p mature miRNA
Sequence 42 - UCGGGGCAGCUCAGUACAGGAU - 63
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415

  2. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545