miRBase entry: cfa-mir-181c

Stem-loop cfa-mir-181c

Accession

MI0008034

Description

Canis familiaris cfa-mir-181c precursor miRNA

Gene family

MIPF0000007; mir-181

Sequence

AACAUUCAACCUGUCGGUGAGUUugggcagcucaggcaaaccaucgaccguugaguggacc
..((((((((..(((((((.(((((...........)))))))))))).))))))))....

Structure

--AA        CU       A     ggca 
    CAUUCAAC  GUCGGUG GUUug    g
    ||||||||  ||||||| |||||    c
    gugaguug  cagcuac caaac    u
ccag        -c       -     ggac

Annotation confidence Not enough data

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Genome context

chr20: 48593343-48593403 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-181c

Accession	MIMAT0006635
Description	Canis familiaris cfa-miR-181c mature miRNA
Sequence	1 - AACAUUCAACCUGUCGGUGAGUU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415