miRBase entry: cfa-mir-199-1

Stem-loop cfa-mir-199-1


Accession
MI0008042
Description
Canis familiaris cfa-mir-199-1 precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

ccaguguucagacuaccuguucagggggcucugaauguguACAGUAGUCUGCACAUUGGUU
(((((((.((((((((.((((((((....)))))......))))))))))).)))))))..

Structure
--       u        c   ------     g 
  ccagugu cagacuac ugu      ucagg g
  ||||||| |||||||| |||      |||||  
  GGUUACA GUCUGAUG ACA      agucu g
UU       C        -   ugugua     c 


Annotation confidence Not enough data
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Genome context
chr20: 50410924-50410984 [+]

Database links

Mature cfa-miR-199

Accession MIMAT0006642
Description Canis familiaris cfa-miR-199 mature miRNA
Sequence 41 - ACAGUAGUCUGCACAUUGGUU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415