miRBase entry: cfa-mir-130b

Stem-loop cfa-mir-130b

Accession

MI0008064

Description

Canis familiaris cfa-mir-130b precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

acucuuucccuguugcacuacugugggccgcugggaagCAGUGCAAUGAUGAAAGGGCAU
.(((((((..(((((((((...((...((....))..)))))))))))..)))))))...

Structure

--a       cc         acu  ggg  g 
   cucuuuc  uguugcacu   gu   cc c
   |||||||  |||||||||   ||   ||  
   GGGAAAG  GUAACGUGA   Cg   gg u
UAC       UA         ---  -aa  g

Annotation confidence Not enough data

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Genome context

chr26: 30924432-30924491 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-130b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-130b

Accession	MIMAT0006659
Description	Canis familiaris cfa-miR-130b mature miRNA
Sequence	39 - CAGUGCAAUGAUGAAAGGGCAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415