miRBase entry: cfa-mir-140

Stem-loop cfa-mir-140


Accession
MI0008100
Description
Canis familiaris cfa-mir-140 precursor miRNA
Gene family
MIPF0000085; mir-140


Sequence

cagugguuuuacccuaugguagguuacgucaugcuguucuACCACAGGGUAGAACCACGGA
..(((((((((((((.(((((((.((.((...)))).))))))).)))))))))))))...

Structure
-ca             a       u  c  c 
   gugguuuuacccu ugguagg ua gu  
   ||||||||||||| ||||||| || || a
   CACCAAGAUGGGA ACCAucu gu cg  
AGG             C       u  -  u 


Annotation confidence Not enough data
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Genome context
chr5: 79814256-79814316 [-]

Database links

Mature cfa-miR-140

Accession MIMAT0006689
Description Canis familiaris cfa-miR-140 mature miRNA
Sequence 41 - ACCACAGGGUAGAACCACGGA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415