miRBase entry: cfa-mir-193b

Stem-loop cfa-mir-193b


Accession
MI0008113
Description
Canis familiaris cfa-mir-193b precursor miRNA
Gene family
MIPF0000082; mir-193


Sequence

CGGGGUUUUGAGGGCGAGAUGAguuuauguuugauccaacuggcccacaaagucccgcu
((((((((((.((((.((.((.(.(((....))).))).)).)))).))))))))))..

Structure
--          A    G  A  A u   u 
  CGGGGUUUUG GGGC AG UG g uua g
  |||||||||| |||| || || | |||  
  gcccugaaac cccg uc ac c agu u
uc          a    g  a  - u   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 28878050-28878108 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-193b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-193b

Accession MIMAT0006699
Description Canis familiaris cfa-miR-193b mature miRNA
Sequence 1 - CGGGGUUUUGAGGGCGAGAUGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415