Stem-loop cfa-mir-339-1

Accession

MI0008115

Description

Canis familiaris cfa-mir-339-1 precursor miRNA

Gene family

MIPF0000193; mir-339

Sequence

UCCCUGUCCUCCAGGAGCUcacuuauaucuggccgugagcuccucgaggccagagccc
...(((.((((.((((((((((............)))))))))).)))).))).....

Structure

--UCC   U    C          uuaua 
     CUG CCUC AGGAGCUcac     u
     ||| |||| ||||||||||      
     gac ggag uccucgagug     c
cccga   c    c          ccggu 

Annotation confidence Not enough data

Genome context

chr6: 15853520-15853577 [+]

Mature cfa-miR-339

• Accession: MIMAT0011134
• Description: Canis familiaris cfa-miR-339 mature miRNA
• Sequence: 1 - UCCCUGUCCUCCAGGAGCU - 19
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415


2. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545