miRBase entry: cfa-mir-127

Stem-loop cfa-mir-127


Accession
MI0008132
Description
Canis familiaris cfa-mir-127 precursor miRNA
Gene family
MIPF0000080; mir-127


Sequence

ccugcugaagcucagagggcucugauucagaaagaucaUCGGAUCCGUCUGAGCUUGGCU
...(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).

Structure
ccu   g         g  c      --  a 
   gcu aagcucaga gg ucugau  uc g
   ||| ||||||||| || ||||||  || a
   CGG UUCGAGUCU CC AGGCUa  ag a
--U   -         G  U      cu  a 


Annotation confidence Not enough data
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Genome context
chr8: 69104938-69104997 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cfa-mir-127
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-127

Accession MIMAT0006713
Description Canis familiaris cfa-miR-127 mature miRNA
Sequence 39 - UCGGAUCCGUCUGAGCUUGGCU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415