miRBase entry: cfa-mir-379

Stem-loop cfa-mir-379


Accession
MI0008134
Description
Canis familiaris cfa-mir-379 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

UGGUAGACUAUGGAACGUAGGcuuugugauuuuugaccuauguaacaugguccacuaac
((((.(((((((..((((((((............).)))))))..))))))).))))..

Structure
--    A       GA       - uuugu 
  UGGU GACUAUG  ACGUAGG c     g
  |||| |||||||  ||||||| |      
  auca cugguac  uguaucc g     a
ca    c       aa       a uuuuu 


Annotation confidence Not enough data
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Genome context
chr8: 69253808-69253866 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from cfa-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-379

Accession MIMAT0006715
Description Canis familiaris cfa-miR-379 mature miRNA
Sequence 1 - UGGUAGACUAUGGAACGUAGG - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415