miRBase entry: cfa-mir-323

Stem-loop cfa-mir-323


Accession
MI0008137
Description
Canis familiaris cfa-mir-323 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

aggugguccguggcgcguucgcuuuauuuauggcgCACAUUACACGGUCGACCUCU
((((.(.(((((..(.((.((((........)))).)).)..))))).).))))..

Structure
--    g u     gc c  u    uua 
  aggu g ccgug  g gu cgcu   u
  |||| | |||||  | || ||||    
  UCCA C GGCAC  U CA gcgg   u
UC    G U     AU A  C    uau 


Annotation confidence Not enough data
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Genome context
chr8: 69257494-69257549 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from cfa-mir-323
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-323

Accession MIMAT0006718
Description Canis familiaris cfa-miR-323 mature miRNA
Sequence 36 - CACAUUACACGGUCGACCUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415