miRBase entry: cfa-mir-543

Stem-loop cfa-mir-543


Accession
MI0008139
Description
Canis familiaris cfa-mir-543 precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

gaaguugcccguguuuuuuucgcuuuauuugugacgAAACAUUCGCGGUGCACUUCUU
(((((.(((((((..(.((((((.........).))))).)..))))).)))))))..

Structure
--     u  -     uu u     - uuu 
  gaagu gc ccgug  u uuucg c   a
  ||||| || |||||  | ||||| |   u
  CUUCA CG GGCGC  A AAAgc g   u
UU     -  U     UU C     a ugu 


Annotation confidence Not enough data
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Genome context
chr8: 69263406-69263463 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from cfa-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-543

Accession MIMAT0006720
Description Canis familiaris cfa-miR-543 mature miRNA
Sequence 37 - AAACAUUCGCGGUGCACUUCUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415