miRBase entry: cfa-mir-485

Stem-loop cfa-mir-485

Accession

MI0008146

Description

Canis familiaris cfa-mir-485 precursor miRNA

Gene family

MIPF0000201; mir-485

Sequence

AGAGGCUGGCCGUGAUGAAUUCGauucaucaaagcgagucauacacggcucuccucucu
(((((..(((((((((((.((((...........)))))))).)))))))..)))))..

Structure

--     CU       -    A    auuc 
  AGAGG  GGCCGUG AUGA UUCG    a
  |||||  ||||||| |||| ||||    u
  ucucc  ucggcac uacu gagc    c
uc     uc       a    -    gaaa

Annotation confidence Not enough data

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Genome context

chr8: 69284239-69284297 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cfa-mir-485

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-485

Accession	MIMAT0006725
Description	Canis familiaris cfa-miR-485 mature miRNA
Sequence	1 - AGAGGCUGGCCGUGAUGAAUUCG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415