Stem-loop cfa-mir-542

Accession

MI0008171

Description

Canis familiaris cfa-mir-542 precursor miRNA

Gene family

MIPF0000185; mir-542

Sequence

ucggggaucaucaugucacgagauaccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((....)))..)))))))))...))))..))))..

Structure

--    gg    uca         -a   c 
  ucgg  auca   ugucacgag  uac a
  ||||  ||||   |||||||||  |||  
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u 

Annotation confidence Not enough data

Genome context

chrX: 105178359-105178417 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-542

Mature cfa-miR-542

• Accession: MIMAT0006747
• Description: Canis familiaris cfa-miR-542 mature miRNA
• Sequence: 38 - UGUGACAGAUUGAUAACUGAAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415