miRBase entry: cfa-mir-106a

Stem-loop cfa-mir-106a

Accession

MI0008173

Description

Canis familiaris cfa-mir-106a precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

AAAGUGCUUACAGUGCAGGUAGcauucugcgaucuacugcaaugcaagcacuucuua
.((((((((.((.(((((...(((...)))......))))).)).))))))))....

Structure

---A        A  G     ---GUA   u 
    AAGUGCUU CA UGCAG      Gca  
    |||||||| || |||||      ||| u
    uucacgaa gu acguc      cgu  
auuc        c  a     aucuag   c

Annotation confidence Not enough data

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Genome context

chrX: 104896518-104896574 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-106a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-106a

Accession	MIMAT0006749
Description	Canis familiaris cfa-miR-106a mature miRNA
Sequence	1 - AAAGUGCUUACAGUGCAGGUAG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415