miRBase entry: cfa-mir-19b-2

Stem-loop cfa-mir-19b-2

Accession

MI0008174

Description

Canis familiaris cfa-mir-19b-2 precursor miRNA

Gene family

MIPF0000011; mir-19

Sequence

guuuugcagguuugcauuucagcguacuugugcauauagggcUGUGCAAAUCCAUGCAAAACUG
((((((((((((((((...((((...(((((....))))))))))))))).)).))))))))..

Structure

--        -  -      uuu    gua     g 
  guuuugca gg uuugca   cagc   cuugu c
  |||||||| || ||||||   ||||   |||||  
  CAAAACGU CC AAACGU   GUcg   ggaua a
GU        A  U      ---    ---     u

Annotation confidence Not enough data

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Genome context

chrX: 104895962-104896025 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-19b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-19b

Accession	MIMAT0006652
Description	Canis familiaris cfa-miR-19b mature miRNA
Sequence	43 - UGUGCAAAUCCAUGCAAAACUG - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415