miRBase entry: cfa-mir-92a-2

Stem-loop cfa-mir-92a-2


Accession
MI0008175
Description
Canis familiaris cfa-mir-92a-2 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

ggguggggauuuguggcauuacuuguguuccauauaaagUAUUGCACUUGUCCCGGCCUGU
((((.(((((..(((.((.(((((((((...)))).))))).)))))..))))).))))..

Structure
--    g     uu   g  u     -    u 
  gggu gggau  gug ca uacuu gugu  
  |||| |||||  ||| || ||||| |||| c
  UCCG CCCUG  CAC GU AUgaa uaua  
UG    G     UU   -  U     a    c 


Annotation confidence Not enough data
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Genome context
chrX: 104895826-104895886 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cfa-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-92a

Accession MIMAT0006653
Description Canis familiaris cfa-miR-92a mature miRNA
Sequence 40 - UAUUGCACUUGUCCCGGCCUGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415