Stem-loop sequence hsa-mir-320d-2

Accession

MI0008192 (change log)

Symbol

HGNC:MIR320D2

Description

Homo sapiens miR-320d-2 stem-loop

Gene family

MIPF0000163; mir-320

Literature search

137 open access papers mention hsa-mir-320d-2
(420 sentences)

Stem-loop

   -uaucaauaa  -      uu       c      g 
5'           gc cuucuc  cccaguu uucuug a
             || ||||||  ||||||| ||||||  
3'           cg ggagag  gggucga aaggac g
   aaagaaaaga  a      uu       a      u 

Deep sequencing

1111677 reads, 2.99e+03 reads per million, 156 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 140926160-140926231 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000058606 ; MAGEC3-001; 3'UTR (exon 1)

  ENST00000298296 ; MAGEC3-001; 3'UTR (exon 1)

Database links

• EntrezGene:MIR320D2
• EntrezGene:MIR320D2
• HGNC:MIR320D2
• RNAcentral:URS000075DEE6_9606
• miRBase Tracker:MI0008192

Mature sequence hsa-miR-320d

• Accession: MIMAT0006764
• Sequence: 42 - aaaagcuggguugagagga - 60
• Deep sequencing: 2578943 reads, 156 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000010C72_9606
• Predicted targets:
  • TargetMiner:hsa-miR-320d
  • TargetScanVert:hsa-miR-320d
  • miRDB:hsa-miR-320d
  • microrna.org:hsa-miR-320d

References

1. PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).