miRBase entry: cel-mir-1829a

Stem-loop cel-mir-1829a


Accession
MI0008197
Description
Caenorhabditis elegans cel-mir-1829a precursor miRNA
Gene family
MIPF0000460; mir-1829


Sequence

1580 reads, 36 reads per million, 16 experiments
AAGGGGACUUCUAAUUGUUUGUAaaaaaucgaguauuaCAACCAUUGGAAUUUCUCUAUU
.((((((.(((((((.(((.((((...........))))))).))))))).))))))...

Structure
--A      C       U   U    aaaa 
   AGGGGA UUCUAAU GUU GUAa    u
   |||||| ||||||| ||| ||||    c
   UCUCUU AAGGUUA CAA Cauu    g
UUA      U       C   -    auga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 15588311-15588370 [-]

Database links

Mature cel-miR-1829a-5p

Accession MIMAT0015267
Description Caenorhabditis elegans cel-miR-1829a-5p mature miRNA
Sequence 1 - AAGGGGACUUCUAAUUGUUUGUA - 23
Evidence experimental
CLIPseq [3]
Database links

Mature cel-miR-1829a-3p

Accession MIMAT0006769
Description Caenorhabditis elegans cel-miR-1829a-3p mature miRNA
Sequence 39 - CAACCAUUGGAAUUUCUCUAUU - 60
Evidence experimental
454 [1], Illumina [2], CLIPseq [3]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  2. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179

  3. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415