miRBase entry: cel-mir-1832a

Stem-loop cel-mir-1832a


Accession
MI0008202
Description
Caenorhabditis elegans cel-mir-1832a precursor miRNA


Sequence

6611 reads, 34 reads per million, 14 experiments
CAGCGAUUCGAACUCCGCCCACUgcaccugauugguugacaagUGGGCGGAGCGAAUCGAUGAU
((.(((((((..((((((((((((((((.....)).)).).)))))))))))))))))).))..

Structure
--  G       AA           - -  -  u 
  CA CGAUUCG  CUCCGCCCACU g ca cc g
  || |||||||  ||||||||||| | || || a
  GU GCUAAGC  GAGGCGGGUga c gu gg u
UA  A       --           a a  u  u 


Annotation confidence High
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Genome context
chrIII: 11829248-11829311 [+]

Database links

Mature cel-miR-1832a-3p

Accession MIMAT0006774
Description Caenorhabditis elegans cel-miR-1832a-3p mature miRNA
Sequence 44 - UGGGCGGAGCGAAUCGAUGAU - 64
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

Mature cel-miR-1832a-5p

Accession MIMAT0032039
Description Caenorhabditis elegans cel-miR-1832a-5p mature miRNA
Sequence 1 - CAGCGAUUCGAACUCCGCCCACU - 23
Evidence not_experimental
Database links

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  2. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415